Software

All software:

• Our lab github

Selected software:

• Deep learning for predictive genomics
  • GattacaNet for polygenic risk scores. Publication
  • LINA for first-order and second-order model interpretation.
• Computer vision for biomedical imaging
  • Percutaneous nephrostomy OCT. Publication
  • Epidural anesthesia OCT.
• Parallel computing for proteomics and metagenomics
  • Sipros for proteomic stable isotope probing. Publication
  • Seq2MAG for metagenomics workflow. Publication

Past software:

• Omega for metagenome assembly. Publication
• Sigma for metagenomic biosurveillance. Publication
• UniFam for functional phylogenomics. Publication
• ProRata for quantitative proteomics. Publication
• MIDAS for metabolite identification in metabolomics. Publication